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Glossary Abbreviations Mn manganese Zn zinc Fe iron Co cobalt Ni nickel Cu copper Se selenium Mo molybdenum Mg magnesium K potassium Pho phosphate Hg mercury Au gold Cd cadmium As arsenic Pb lead FeS ironsulfur Cys cysteine His histidine Asp aspartate Glu glutamate Met methionine Pro proline Trp tryptophan Asn asparagine Gly glycine Ser serine Lys lysine RSSH organic persulfide CSSH cysteine persulfide GSSH glutathione persulfide H 2 S hydrogen sulfide ROS reactive oxygen species RNS reactive nitrogen species GSNO S -Nitrosoglutathione NO x nitric oxide (NO) and nitrogen dioxide (NO 2 ) RES reactive electrophile species RSS reactive sulfur species Moco molybdenum cofactor GMPPNP 5-Guanylyl imidodiphosphate GMPPCP Guanylyl 5- (,methylenediphosphonate) ppGpp guanosine tetraphosphate pppGpp guanosine pentaphosphate GTP guanosine triphosphate GDP guanosine diphosphate ATP adenosine triphosphate H 2 NTP 7,8-dihydroneopterin triphosphate THF tetrahydrofolate Q queuosine CAA carbamoyl aspartate DHO dihydroorotate EDTA Ethylenediaminetetraacetic acid PPRPP Phosphoribosyl diphosphate AMA aspergillomarasmine A ZTP 5-amino 4-imidazole carboxamide riboside 5-triphosphate GTPS guanosine 5-O-[-thio]triphosphate HDX-MS hydrogendeuterium exchange mass spectrometry AdoCbl adenosylcobalamin HMW high molecular weight ZF zinc finger NTD N-terminal domain CC coiled-coil HTH helix-turn-helix DNA binding motif TM transmembrane domain MBD metal-binding domain DBD DNA-binding domain MBL metal binding loop FCD FadR C-terminal domain DNA DNA RNA ribonucleic acid mRNA mRNA tRNA tRNA 5 UTR 5 Untranslated Region aTFs allosteric transcription factors MoTTs modification-tunable transcripts WCB whole cell biosensor LOD limit of detection SDA strand displacement amplification NAST nicked DNA template-assisted signal transduction Tx-Tl transcription-translation SELIS Seamless Enrichment of Ligand-Inducible Sensors EXAFS Extended X-ray Absorption Fine Structure XAS X-ray absorption spectroscopy EDS energy-dispersive X-ray spectroscopy Cryo-EM cryogenic electron microscopy SSN sequence similarity network NMR nuclear magnetic resonance spectroscopy SAXS small-angle X-ray scattering FRET Frster resonance energy transfer ICP-MS inductively coupled plasma-mass spectrometry 2D-LC-ICP-MS Two-dimensional liquid chromatography inductively coupled plasma mass spectrometry GE-LS polyacrylamide gel electrophoresis laser ablation isoTOP-ABPP isotopic tandem orthogonal proteolysis-activity-based protein profiling K d dissociation equilibrium constant pM picomolar nM nanomolar EC Enzyme Commission PDB Protein Databank CP calprotectin NMC nucleotide-dependent metallochaperones GAP GTPase activating protein ArsR arsenic repressor IdeR Iron-dependent repressor MerR mercuric ion resistance regulator CsoR copper sensitive operon repressor CstR CsoR-like sulfurtransferase repressor CopY copper-responsive repressor Fur ferrous iron uptake repressor Zur Fur family zinc uptake regulator DtxR Diphtheria toxin repressor NikR Nickel responsive regulator of the nik operon GntR gluconate repressor Mar multiple antibiotic resistance repressor TetR Tetracycline Repressor LysR lysine repressor DHOase dihydroorotase PyrC pyrimidine biosynthetic enzyme dihydroorotase QueD: 6-carboxy-5 6,7,8-tetrahydropterin synthase DksA RNA polymerase-binding transcription factor DksA/DnaK suppressor protein FolE GTP cyclohydrolase-IA (GCYH-1A) CA carbonic anhydrase SODs superoxide dismutases camSOD cambialistic superoxide dismutase nsp nonstructural protein PTP1B protein tyrosine phosphatase 1B PBP2 penicillin-binding protein MBLs metallo--lactamases SIMIBI Signal recognition particle, MinD and BioD ZigA Zur-induced GTPase A MCM methylmalonyl-CoA mutase MeaB MCM accessory GTPase UreG urease accessory GTPase NHase nitrile hydratase MPY mycobacterial factor Y Mrf MPY recruitment factor ZNG1 Zn-regulated GTPase metalloprotein activator METAP1 methionine aminopeptidase-1 NAC nascent polypeptide-associated complex Csp copper storage protein MCO multicopper oxidase SERCA sarco(endo)plasmic reticulum calcium ATPase SPCA1 secretory-pathway Ca II -ATPases Biographies Daiana A